Previous Projects

Magnetic Field as a Probe of Cell Physiology

Metastatic cancer cells are typically more depolarized than normal cells and there is evidence to support the idea that ion channel/transporter activation and the related ionic flux are linked to cancer. Based on this, Professor of Engineering Ramesh Jagannathan (NYUAD) and I worked together to begin creating a non-invasive magnetoencephalography (MEG) technique to monitor the magnetic field resulting from the cellular level process of ion transport through membranes as an indicator of cell health.


Discovering Inhibitors of Sodium-Glucose Co-transporters SGLT1 and SGLT2

Type 2 diabetes is a growing public health concern. Well-known alpha-glucosidase inhibitors, such as acarbose, miglitol, or voglibose, are used to inhibit glucose uptake in the intestine and treat the disease. A more recently validated strategy involves inhibiting glucose reabsorption in the kidneys to lower blood glucose levels through the inhibition of sodium glucose co-transporter proteins (SGLTs). In collaboration with Amélia Rauter’s laboratory at the University of Lisbon, we studied the biological activity of a small library of C-glucosyl dihydrochalcones that included nothofagin, a natural product found in rooibos, to elucidate the possible molecular mechanisms for the anti-diabetic properties of rooibos. The C-glucosyl dihydrochalcones showed little toxicity to HEK293 cells in culture and were particularly potent and highly selective against SGLT2 (IC50 = 9-23 nM) over SGLT1 (IC50 = 10-19 µM) and the non-sodium dependent GLUT family of glucose transporters. The latter two are potential sources of adverse side effects.


Approaches to Kinesin Motor Protein Inhibitors

The kinesin motor proteins are critical for many cellular functions, including cell division, vesicle and organelle transport, and motility. As such, it is implicated in neurological and development disorders and is a potential target for cancer therapy. Kinesin motors consist of two identical ~960 amino-acid chains that contain an N-terminal globular motor domain, a central a-helical region, and a C-terminal tail that binds light chains, which mediate binding to the cargo. An ATP binding site on the motor domain is the source of ATPase activity, which is used to convert chemical energy into mechanical motion. Kinesin walks along microtubules processively, where the motor domains make alternate contact with the microtubules. There are many questions related to the function of individual members of these families of proteins that could be answered if there existed specific membrane permeant small molecule inhibitors. Outside of nucleotide analogs, which are nonspecific, only a few molecules exist that specifically inhibit motor proteins at low concentrations. Adociasulfate-2 (AS-2) from the Haliclona sp. sea sponge inhibits microtubule-stimulated kinesin ATPase activity (IC50 = 2.7 μM). Through computational and biochemical studies of AS-2 and kinesin, my laboratory has developed an understanding of how AS-2 inhibits the ATPase activity of kinesin. AS-2 does not behave as a classic 1:1 inhibitor of kinesin ATPase activity. Instead, the inhibitory entity is a rod-shaped aggregate that mimics microtubules. This is interesting because AS-2, as a chiral compound with multiple stereocenters, is an unusual type of aggregator, and its inhibitory action is contrary to assumptions made in the literature on its effects. The ordered structure of the aggregates is atypical. It is the first demonstration that a natural product can act as a “promiscuous” inhibitor through aggregation and an example of how a small molecule can disrupt a protein-protein interaction (kinesin-MT). It suggests that aggregates of small molecules might have interesting and biologically relevant properties.


Doctoral Education Research

The Survey on Doctoral Education and Career Preparation was a Pew Charitable Trusts-supported research project that sought to better understand the process of doctoral education from the perspective of graduate students. My collaborator, Chris Golde, and I surveyed 4114 doctoral students in 11 arts and sciences disciplines (including chemistry) at 28 programs across the US in order to understand why doctoral students pursue the Ph.D., how effective doctoral programs are at preparing students for academic and other careers, and how clear the process of doctoral education is to students before and during their course of study. The results of the survey, commonly referred to as the “Golde-Dore study,” were published in January 2001 (http://www.phd-survey.org) and a book chapter followed in 2004. The impact of the study was extraordinary. Numerous articles about it have appeared in scholarly, professional, and mass media, and the data have been used for a number of follow-up studies. The initial report has been downloaded from the study website over 19,000 times, and the data and findings have been used to improve doctoral programs worldwide.