Selected Publications
Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. R.L. Chang, L. Ghamsari, A. Manichaikul, E.F. Hom, S. Balaji, W. Fu, Y. Shen, T. Hao, B.Ø. Palsson, K. Salehi-Ashtiani§, J.A. Papin§. Molecular Systems Biology. 7:518, 2011. (§= corresponding author)
COT drives resistance to RAF inhibition through MAPkinase pathway reactivation. C.M. Johannessen et al. Nature 468:968-972, 2010.
The landscape of C. elegans 3'UTRs. M. Mangone et al. Science 329:432-435, 2010.
Metabolic network analysis integrated with transcript verification for sequence genomes. A. Manichaikul, L. Ghamsari, E.F. Hom, C. Lin, R.R. Murray, R.L. Chang, S. Balaji, T. Hao, Y. Shen, A.K. Chavali, I. Thiele, X. Yang, C. Fan, E. Mello, D.E. Hill, M. Vidal, K. Salehi-Ashtiani§, J.A. Papin§. Nature Methods 6: 589-592, 2009. (§= corresponding author)
Isoform discovery using targeted cloning, “deep well” pooling, and parallel sequencing. K. Salehi-Ashtiani§ et al. Nature Methods, 5:597-600, 2008. (§= corresponding author)
A Genome-wide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. K. Salehi-Ashtiani, A. Luptak, A. Litovchick, J.W. Szostak. Science; 313:1788-1792, 2006.
In vitro evolution suggests multiple origins for the hammerhead ribozyme. K. Salehi-Ashtiani, J.W. Szostak. Nature 414: 82-84, 2001.